Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs16847139 | chr3:99999176 | A/G | 1.39E-5 | 212 | 16.47 | 19.3 | 3.85 | KM Plot |
KIRP | rs16852409 | chr1:178041772 | A/G | 3.84E-5 | 214 | 15.88 | 17.52 | 9.92 | KM Plot |
KIRP | rs16865437 | chr3:190113927 | T/G | 9.91E-5 | 213 | 13.77 | 19.92 | 12.1 | KM Plot |
KIRP | rs16876622 | chr8:30035636 | C/T | 1.44E-6 | 210 | 15.33 | 17 | 0.2 | KM Plot |
KIRP | rs16876731 | chr8:30099529 | G/A | 1.07E-6 | 212 | 15.2 | 19.98 | 4.88 | KM Plot |
KIRP | rs16916372 | chr10:63362497 | T/C | 0 | 214 | 18.25 | 10.23 | 1.17 | KM Plot |
KIRP | rs16916390 | chr10:63369907 | T/C | 0 | 212 | 18.25 | 9 | 1.17 | KM Plot |
KIRP | rs16916421 | chr10:63377651 | G/T | 0 | 212 | 18.02 | 9 | 1.17 | KM Plot |
KIRP | rs16916430 | chr10:63385234 | G/A | 0 | 213 | 18.03 | 9 | 1.17 | KM Plot |
KIRP | rs16916499 | chr10:63448385 | T/C | 0 | 213 | 18.02 | 6.83 | 3.38 | KM Plot |
KIRP | rs16916549 | chr10:63495205 | C/T | 0 | 214 | 18.02 | 9.65 | 3.38 | KM Plot |
KIRP | rs16916589 | chr10:63515773 | T/C | 0 | 210 | 16.98 | 6.83 | 6.7 | KM Plot |
KIRP | rs16920354 | chr9:4007439 | A/G | 0.000364 | 214 | 15.33 | 17.07 | 10.3 | KM Plot |
KIRP | rs16926295 | chr11:34897944 | T/C | 0 | 214 | 15.33 | 17 | 3.83 | KM Plot |
KIRP | rs16930384 | chr10:74931982 | G/C | 5.34E-12 | 213 | 16.73 | 11.77 | 5.6 | KM Plot |